Gene Finding Related Tools

 

Sl no

  

Name of S/W

Linux

Windows

  

Features

 

Download

 

Online

 

Download

 

Online

1

Sybil

Y

Y

N

Y

Comparative Genomics

2

Manatee

Y

N

N

N

Gene evaluation / Genome annotation

 

3

GlimmerHMM

Y

N

N

N

Gene Finding, Eukaryotes

 

4

Glimmer

Y

N

N

N

Gene Finding, microbial

 

 

5

GeneSplicer

 

Y

N

N

N

Splice Site Detection

 

 

6

GeneZilla

Y

N

N

N

Gene Finding

 

 

7

Unveil

Y

Y

N

Y

Gene Finding

 

8

JIGSAW

Y

N

N

N

Gene Finding

 

 

9

SEE BEE

N

Y

N

Y

Exon Splicing Enhancer Identification

 

10

StartaSplice

Y

N

Y

N

Human Splice Site Detection

 

11

Eponine

Y

N

Y

N

Mammalian Transcription Start Site detection

 

12

PSILC

Y

N

N

N

Pseuodogene Inference

 

 

13

Hexamer

Y

N

N

N

Coding Region Identification

 

14

SsahaEST

Y

N

N

N

ESTs/cDNAs aligning with genomic DNA

 

                                                                                                                                                            Contd..